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Genetic Epidemiology Scripts - OpenMx


Website: OpenMx
Text: Methodology for Genetic Studies of Twins and Families by Neale & Cardon, 1992 revision PDF of Neale & Maes book
Manual: Mx: Statistical Modeling by Neale, Boker, Xie & Maes, 2006 PDF of Mx manual

Number Lecture Topic Presentation Notes and Examples
1 Introduction to R Tim's R Session 11
R for OpenMx Reference Key
2 Introduction to OpenMx OpenMx SMEP Presentation
OpenMx Intro Presentation
Intro Scripts

OpenMx Reference Key
First OpenMx script
3 Matrix Algebra & Optimization Matrix Algebra
MatrixAlgebraExercises
Matrix Algebra Exercises
4 Means & Variance Modeling Univariate Saturated
Bivariate Saturated
5 Saturated Twin Modeling Univariate Twin Saturated -Matrix Raw Continuous
Univariate Twin Saturated -Matrix Raw Binary
Univariate Twin Saturated -Matrix Raw Ordinal
6 Univariate Twin Modeling Univariate Twin ACE -Matrix Raw Continuous
Univariate Twin ACE -Matrix Raw Binary
Univariate Twin ACE -Matrix Raw Ordinal
7 Heterogeneity Twin Modeling ACE 5 group graph
ADE 5 group graph
Heterogeneity Twin Quant Diff [same sex] -Matrix Raw Continuous
Heterogeneity Twin Quant Diff [same sex] -Matrix Raw Ordinal
Heterogeneity Twin Quant/Qual Diff [SS+OS] -Matrix Raw Continuous
Heterogeneity Twin Quant/Qual Diff [SS+OS] -Matrix Raw Ordinal
8 Moderated Twin Modeling
9 Bivariate Twin Modeling
10 Multivariate Twin Modeling IP graph
CP graph
Multivariate Twin ACE -Matrix Raw Continuous
11 Helper Functions Genetic Epidemiology Helper Functions Gen Epi Helper Functions

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