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NIDA 2012 AGES WORKSHOP

Website: OpenMx Reference Keys: OpenMx R for OpenMx Program: AGES Program

Date/Time Lecturer Lecture Topic Presentation Notes and Examples Videos
Monday October 22: Multivariate Genetic Modeling
9am Kendler Statistical Genetics of Substance Use Introduction.ppt
10am York Review 1: R & OpenMx Gen Epi Helper Functions
R_Introduction.R
11am Maes/Prom Review Multivariate Genetic Factor Analysis ReviewMultivariatr.pdf
Carey BG 1988
twinMulAceOrd.R selVATSma.dat
twinCCCAceOrd.R selVATSird.dat
1:30pm Gillespie/Verhulst Direction of Causation DirectionOfCausation.pdf
Lee 2012 Correlation-Causation
Lee 2012 Commentary
DOC_continuous.R Watch Video
3pm Neale/Maes Comorbidity Comorbidity.pdf altform.R
bivariateBinaryACE.R
bivariateBinaryACENoCon.R
directionofCausation.R
randomMultiformity.R
threeDisorders.R
readffpairs.R ffpairs.rec
runAll.R comorbPlot.R
Watch Video
Tuesday October 23: Measurement & Phenotyping
8am Medland Threshold Modeling TuesdayMorning.pptx
DataPreparation.pptx
threshold.R thresholds.xls
twinAceBin-Traditional.R
twinAceOrd-Traditional.R
twinAceBin-FixE.R
twinAceOrd-FixE.R
twinAceOrd-FixThresholds.R
two_cat.dat
9am Neale/Clark Measurement Invariance / Underreporting MeasurementInvariance.pdf MIExample.R octomult_10aug2010.rdata Watch Video
11am Estabrook/Gillespie Factor Scores/ Item Response Model FactorScoringAndIRT.pdf factorScores.R fsData.txt
transformFactorScores.R trueFactorScores.txt
Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
Watch Video Part 4
1:30pm Clark/Estabrook Latent Class Analysis/Factor Mixture Model Crosssectional_Mixture.pptx Data_Oz_CAN_Sim.dat
LCA_example.R LCA_2Classes.Rdata
LCA_example_3c.R LCA_3Classes.Rdata
LCA_example_4c.R LCA_4Classes.Rdata
LCAdata.R
Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
Wednesday October 24: Genes, Environment and Development
8am Medland WednesdayMorning.pptx
MatrixAlgebraHandout.pdf
twinACE.R
twinACECovSex.R
twinACECovSexAge.R
prepearlier.R
9am Mehta/Neale Hierarchical Mixed Modeling ML-SEMinBehavioralGenetics.pdf nLevelSEM-APracticalIntroduction.pdf Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
Watch Video Part 4
Watch Video Part 5
Watch Video Part 6
11:30am Gillespie/Eaves Latent Growth Curve Modeling LGC_modeling.pdf LGC_ordinal.R
LGC_continuous.R growth.csv
polychoricFunctionSim.R
Watch Video Part 1
Watch Video Part 2
1:30pm Clark/Estabrook Growth Mixture Modeling, Regime Switching GrowthMixtureModeling.pptx GMM_example.R growth.csv Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
Thursday October 25: Family Processes
8am Medland ThursdayMorning.pptx
Ordinal.pptx
twinACE.R
twinAceOrd-FixThresholds.R
9am Eaves/Maes Twin-Family and Extended Pedigrees ExtendedTwinKishipDesigns.pptx
AGESSiblingSpouseInteraction.pptx
Siblings.R Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
Watch Video Part 4
11am Maes/Eaves Nuclear Family, COT, ET MLcorrelations.pdf
ETdesigns.pdf
Et88-P.R MZM DZM MZF DZF DZO
ET88-P2.R ETdata.txt
Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
1:30pm Verhulst/Medland Sibling Models and Age Difference Moderation ModeratingCovariance.pptx TaSsim1.R TaSdata.csv
TaSmod.R
ModGraph.R
Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
Watch Video Part 4
3:30pm Verhulst Building Models from Scratch ACE example.R Watch Video Part 1
Watch Video Part 2
Friday October 26: GxE Interaction
8am York VCxEnvSimulatedSTUDENT.R
GxEdata.csv
9am Eaves/York/Medland Genotype Environment Interaction GxE_Interaction.ppt
Purcell_2002 Purcell & Sham_2002
Medland_2009
Nature Letter 2012
binaryGE.R GxEdata.csv
ordinalGE.R
continuous_rGE.R
binaryGE_CI_wrong.R badCIs.pdf
binaryGE_CI_correct.R goodCIs.pdf
Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
11am Bates/Maes/Prom Measured & Unmeasured GxE Interaction SEM_Measured_Genotypes.pptx UnivTwinACEGOrdExP.R selVATS.dat Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
Watch Video Part 4
1:30pm Eaves/Neale Model Limitations SummaryNIDA_AGES_Workshop.pdf LCA_ExampleSeparateItemsPlanB.R Watch Video Part 1
Watch Video Part 2
Watch Video Part 3
Watch Video Part 4

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